http://www.blast2go.org/ 2010-03-13T02:38:09+01:00 http://www.blast2go.org/ http://www.blast2go.org/lib/images/favicon.ico text/html 2010-03-12T00:57:07+01:00 aconesa http://www.blast2go.org/faq <pre> @@ -57,4 +57,7 @@ **Q: How do I obtain all the sequences present in a given slide (GO term) of the pie charts or node of the Combined Graph?**\\ **A:** When you create the combined graph (prior to the pie charts), there is an option to export the graph information as txt file. This is represented by an icon with the letters //txt// on the graph top bar. In this file you can find all sequences annotated to each term present in the combined graph or pie chart. ----- + **Q: What is the BDA (Blast2GO Descriptor Annotator)? **\\ + **A:** The BDA, in a first step, filters out words from an exclusion list, ID and ACC as well as character and number codes. + In a second step, it counts the frequency of word for all blast hit descriptions and transfers the most frequent ones to the query sequence.Users can de-activate or undo the BDA for some sequences results going to Menu-&gt;Tools-&gt;Reset BDA, or change the description of sequences manually, under context menu. </pre> text/html 2010-02-14T20:41:24+01:00 sgoetz http://www.blast2go.org/b2g_in_papers <pre> @@ -3,9 +3,9 @@ === Citing Blast2GO === * Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Tim D. Williams, &lt;html&gt;&lt;!--Shivashankar H. Nagaraj,--&gt;&lt;/html&gt; María José Nueda, Montserrat Robles, Manuel Talón, Joaquín Dopazo and Ana Conesa\\ **High-throughput functional annotation and data mining with the Blast2GO suite.**\\ Nucleic Acids Res. 2008 June; 36(10): 3420–3435. \\ **[[supplementary|Supplementary Material]]** * Ana Conesa and Stefan Götz \\ **Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics.** \\ Int J Plant Genomics. 2008; 2008: 619832. - * [[http://bioinformatics.oxfordjournals.org/cgi/content/full/21/18/3674|Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón and Montserrat Robles **Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research.** Bioinformatics 2005 21: 3674-3676]] + * Ana Conesa, Stefan Götz, Juan Miguel García-Gómez, Javier Terol, Manuel Talón and Montserrat Robles \\**Blast2GO: A universal tool for annotation, visualization and analysis in functional genomics research.**\\ Bioinformatics 2005 21: 3674-3676 [[http://bioinformatics.oxfordjournals.org/cgi/content/full/21/18/3674|LINK]] === Blast2GO in Papers === \\ {{:donde.png|donde nos cintan}} </pre> text/html 2010-02-02T20:32:41+01:00 sgoetz http://www.blast2go.org/sidebar <pre> @@ -19,13 +19,13 @@ &lt;html&gt;&lt;!--[[http://bioinfo.cipf.es/toolsusage/b2g?zoom=2&amp;lat=14&amp;lon=9&amp;layers=BTF|{{:map.gif|}}]]--&gt;&lt;/html&gt; \\ ------ [[http://twitter.com/blast2go|{{:twitter_feed_icon.png|}}]][[http://twitter.com/statuses/user_timeline/74696035.rss|{{:rss.png|}}]] **TWITTER NEWS** - {{rss&gt;http://twitter.com/statuses/user_timeline/74696035.rss 6 date 1h}} + {{rss&gt;http://twitter.com/statuses/user_timeline/74696035.rss 5 date 1h}} ------ [[http://groups.google.es/group/Blast2GO|{{:googlegroupicon.jpg?20|}}]][[http://groups.google.com/group/blast2go/feed/rss_v2_0_topics.xml|{{:rss.png|}}]] **GOOGLE GROUP Discussion** {{rss&gt;http://groups.google.com/group/blast2go/feed/rss_v2_0_topics.xml 5 date 1h}} [[googlegrouppage|... more messages]] </pre> text/html 2010-01-21T07:30:26+01:00 aconesa http://www.blast2go.org/home <pre> @@ -3,10 +3,8 @@ ~~ ====== Welcome to Blast2GO ====== - &lt;html&gt;&lt;p align=&quot;center&quot;&gt;&lt;span style=&quot;color:red;font-size:120%;&quot;&gt;For the fast ones: Functional Annotation Workshop in CAPE TOWN, 3-4 Dec !!!&lt;br&gt;Next courses again in 2010&lt;/span&gt;&lt;/p&gt;&lt;/html&gt; - [[http://bioinfo.cipf.es/blast2gocourse/|{{ :b2g_icourse_compose2.png?w=600 |}}]] \\ Blast2GO is an ALL in ONE tool for functional annotation of (novel) sequences and the analysis of annotation data. Main Application Features a </pre> text/html 2010-01-07T13:45:09+01:00 sgoetz http://www.blast2go.org/tut <pre> @@ -1,5 +1,5 @@ - ===== Format, blast a fasta-file and import results to Blast2GO ===== + ===== Format and blast a fasta-file and import results into Blast2GO ===== Tips to format a database so that the results can than later be imported to blast2go without problems. The important thing here is to adapt the fasta sequence descriptions in a way that they can be parsed without problems. additionlly you will have to run &quot;formatdb&quot; with the &quot;-o T&quot; and ·-a F&quot; option. **1.** Download a fasta file of your choice and unzip it. </pre>